This advanced hands-on workshop is an introduction to the scripting interface of the Fiji application, an open-source and enhanced version of the popular ImageJ program used for scientific image processing. Participants will learn how to write scripts for automated execution of image processing pipelines and batch processing of multiple image files in Fiji. Example scripts will be provided using the Python and BeanShell languages.

Pre-requisites:
Familiarity with ImageJ/Fiji and some programming experience (any language) is recommended but not absolutely required. Participants are encouraged to bring their own laptop with Fiji preinstalled. Don’t think you’re ready? Check out the "Introduction to scientific image processing with Fiji/ImageJ” workshop on February 20.

Instructions for installations of Fiji on Windows, Mac OSX, and Linux can be found on this website: https://fiji.sc/#download